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dc.contributor.authorTerpilowski, M.A.en
dc.contributor.authorKorf, E.A.en
dc.contributor.authorJenkins, R. O.en
dc.contributor.authorGoncharov, Nikolay V.en
dc.date.accessioned2018-03-19T15:17:01Z
dc.date.available2018-03-19T15:17:01Z
dc.date.issued2018-02-22
dc.identifier.citationTerpilowski, M.A., Korf, E.A. Jenkins, R. O. and Goncharov, Nikolay V. (2018) An algorithm for deriving combinatorial biomarkers based on ridge regression. Journal of Bioinformatics and Genomics, 1(6), pp. 1-8.en
dc.identifier.issn2530-1381
dc.identifier.urihttp://hdl.handle.net/2086/15521
dc.description.abstractMotivation: Combinatorial biomarkers are considered more specific and sensitive than single markers in medical diagnostics and prediction, yet even detection of such these combinatorial biomarkers requires deep computational analysis. The principles of analytic combinatorics, linear and kernel ridge regression, and machine learning were applied to derive new combinatorial biomarkers of muscle damage. Results: Lactate, phosphate, and middle-chain fatty acids were most often included into biochemical combinatorial markers, while the following physiological parameters were found to be prevalent: muscle isometric strength, H-reflex length, and contraction tone. Several strongly correlated combinatorial biomarkers of muscle damage with high prediction accuracy scores were identified. The approach — based on computational methods, regression algorithms and machine learning — provides a flexible, platform independent and highly extendable means of discovery and evaluation of combinatorial biomarkers alongside current diagnostic tools. Availability: The developed algorithm was implemented in Python programming language on a quantitative dataset comprising 23 biochemical parameters, 37 physiological parameters and 3,903 observations. The algorithm and our dataset are available free of charge on GitHub. Supplementary information: Supplementary data are available at Journal of Bioinformatics and Genomics online.en
dc.language.isoenen
dc.publisherCifraen
dc.subjectbiomarkersen
dc.subjectcombinatoricsen
dc.subjectmachine learningen
dc.subjectbioinformaticsen
dc.subjectmuscle damageen
dc.titleAn algorithm for deriving new combinatorial biomarkers based on ridge regressionen
dc.typeArticleen
dc.identifier.doihttps://doi.org/10.18454/jbg.2018.1.6.2
dc.researchgroupBiomedical and Environmental Healthen
dc.peerreviewedYesen
dc.funderRussian Federal Agency for Scientific Organizationsen
dc.projectidprogramme АААА-А18-118012290142-9en
dc.cclicenceN/Aen
dc.date.acceptance2018-02-22en
dc.researchinstituteInstitute for Allied Health Sciences Researchen


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